Nanopore WGS of Pseudomonas oleovorans ERA - SRA

SRX25719171: Nanopore WGS of Pseudomonas oleovorans ERA
1 OXFORD_NANOPORE (PromethION) run: 27,734 spots, 232.2M bases, 184.1Mb downloads

Design: Whole genomic DNA was extracted from an overnight sample grown in LC media and initiated from a single colony. Oxford Nanopore sequencing was performed by Plasmidsaurus. Library selection was limited to 0.6x bead cleanup to remove highly degraded fragments <450bp. An amplification-free long-read sequencing library was prepared using v14 library prep chemistry and sequenced using R10.4.1 flow cells.

Submitted by: Rutgers University

Study: Complete Genomes of Common Bacterial Hosts of RNA Bacteriophage phi6

PRJNA1142166 • SRP526700 • All experiments • All runs

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Bacterial plant pathogens Pseudomonas savastanoi pv phaseolicola (HB10Y, supplied by Leonard Mindich), P. tomato (Gregory Martin collection number 113), P. syringae pv atrofaciens (G. Martin 2231), and P. pseudoalcaligenes East River isolate A (L. Mindich) serve as common laboratory hosts for dsRNA bacteriophage phi6, a widely used model organism to study dsRNA viruses.

Sample:

SAMN42927923 • SRS22360064 • All experiments • All runs

Organism: Ectopseudomonas oleovorans

Library:

Name: ERA_Nanopore

Instrument: PromethION

Strategy: WGS

Source: GENOMIC

Selection: other

Layout: SINGLE

Runs: 1 run, 27,734 spots, 232.2M bases, 184.1Mb

Run	# of Spots	# of Bases	Size	Published
SRR30258003	27,734	232.2M	184.1Mb	2024-08-16

ID:: 34749916

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